FISH

mFISH - BANDING IN HUMAN

Basics and literature on multicolor fluorescence in situ hybridization application

 

Cross-species color banding (Rx-FISH)

The probes initially used are flow sorted chromosomes of two gibbon species (Hylobates concolor and H. syndactylus), which show both highly rearranged karyotypes with respect to the human one. Using this probe set the chromosomes #15, #18, #21, #22 and the sex chromosomes do not differentiate in segments [Müller et al., 1997]. Thus, chromosomes of another gibbon species (H. leucogenys) have been flow sorted, split in three portions, labeled with three different fluorochromes and the resulting probe set has been called Rx-FISH [Müller et al., 1998]. A resolution of 160 bands per haploid karyotype can be achieved, when combining the Rx-FISH probe set with 110 human-hamster somatic cell hybrids mentioned before [bar code section], split in 2 different pools and labeled with 2 additional fluorochromes [Müller and Wienberg, 2000].

 

  • Aamot HV, Micci F, Holte H, Delabie J, Heim S (2005) G-banding and molecular cytogenetic analyses of marginal zone lymphoma. Br J Haematol 130:890-901
    
  • Angle B, Yen F, Hersh JH, Gowans G, Barch M (2002) Partial duplication 4q and deletion 1p36 in monozygotic twins with discordant phenotypes. Am J Med Genet 111: 307-312.
    
  • Borg I, Squire M, Menzel C, Stout K, Morgan D, Willatt L, O'Brien PC, Ferguson-Smith MA, Ropers HH, Tommerup N, Kalscheuer VM, Sargan DR (2002) A cryptic deletion of 2q35 including part of the PAX3 gene detected by breakpoint mapping in a child with autism and a de novo 2;8 translocation. J Med Genet 39:391-399.
    
  • Corzo C, Petzold M, Mayol X, Espinet B, Salido M, Serrano S, Real FX, Sole F (2003) RxFISH karyotype and MYC amplification in the HT-29 colon adenocarcinoma cell line. Genes Chromosomes Cancer 36: 319-320.
    
  • de Oliveira EH, Neusser M, Pieczarka JC, Nagamachi C, Sbalqueiro IJ, Muller S (2005) Phylogenetic inferences of Atelinae (Platyrrhini) based on multi-directional chromosome painting in Brachyteles arachnoides, Ateles paniscus paniscus and Ateles b. marginatus. Cytogenet Genome Res 108: 183-190.
    
  • Durante M, George K, Cucinotta FA (2006) Chromosomes lacking telomeres are present in the progeny of human lymphocytes exposed to heavy ions. Radiat Res 165:51-58
    
  • Espinet B, Salido M, Pujol RM, Florensa L, Gallardo F, Domingo A, Servitje O, Estrach T, Garcìa-Muret P, Woessner S, Serrano S, Solé F (2004) Genetic characterization of Sézary's syndrome by conventional cytogenetics and cross-species color banding fluorescent in situhybridization. Haematologica 89:165-173.
    
  • Ferguson-Smith MA, Yang F, Rens W, O'Brien PC (2005) The impact of chromosome sorting and painting on the comparative analysis of primate genomes. Cytogenet Genome Res 108: 112-121.
    
  • Harrison CJ, Gibbons B, Yang F, Butler T, Cheung KL, Kearney L, Dirscherl L, Bray-Ward P, Gregson M, Ferguson-Smith M (2000) Multiplex fluorescence in situ hybridization and cross species color banding of a case of chronic myeloid leukemia in blastic crisis with a complex Philadelphia translocation. Cancer Genet Cytogenet 116: 105-110.
    
  • Harrison CJ, Yang F, Butler T, Cheung KL, O'Brien PC, Hennessy BJ, Prentice HG, Ferguson-Smith M (2001) Cross-species color banding in ten cases of myeloid malignancies with complex karyotypes. Genes Chromosomes Cancer 30: 15-24.
    
  • Hills LV, Nouri S, Slater HR (2003) Pericentromeric euchromatin is conserved in minute human supernumerary chromosomes: a study using cross-species colour segmenting (RxFISH). Chromosome Res 11:359-363
    
  • Hwang HJ, Kim GJ, Lee GB, Oh JT, Chun YH, Park SH (2003) A comprehensive karyotypic analysis on Korean hepatocellular carcinoma cell lines by cross-species color banding and comparative genomic hybridization. Cancer Genet Cytogenet 141: 128-137.
    
  • Kim DG, Park SY, You KR, Lee GB, Kim H, Moon WS, Chun YH, Park SH (2001) Establishment and characterization of chromosomal aberrations in human cholangiocarcinoma cell lines by cross-species color banding. Genes Chromosomes Cancer 30: 48-56.
    
  • Kim GJ, Park SY, Kim H, Chun YH, Park SH (2001) Chromosomal aberrations in neuroblastoma cell lines identified by cross species color banding and chromosome painting. Cancer Genet Cytogenet 129: 10-16.
    
  • Koo SH, Kwon KC, Park JW, Lee YE, Kim JW (2000) Characterization of chromosomal breakpoints in an ALL patient using cross-species color banding. Cancer Genet Cytogenet 119: 118-120.
    
  • Leite RP, Souto M, Carvalho B, Martins M, Chaves R, Morais A, Guedes-Pinto H, Wienberg J, Ribeiro E (2006) Identification, characterization and clinical implications of two markers detected at prenatal diagnosis. Prenat Diagn 26:920-924.
    
  • Micci F, Teixeira MR, Dietrich CU, Saeter G, Bjerkehagen B, Heim S (1999) Combined RxFISH/G-banding allows refined karyotyping of solid tumors. Hum Genet 104: 370-375.
    
  • Micci F, Teixeira MR, Heim S (2001) Complete cytogenetic characterization of the human breast cancer cell line MA11 combining G-banding, comparative genomic hybridization, multicolor fluorescence in situ hybridization, RxFISH, and chromosome-specific painting. Cancer Genet Cytogenet. 131: 25-30.
    
  • Micci F, Walter CU, Teixeira MR, Panagopoulos I, Bjerkehagen B, Saeter G, Heim S (2003) Cytogenetic and molecular genetic analyses of endometrial stromal sarcoma: nonrandom involvement of chromosome arms 6p and 7p and confirmation of JAZF1/JJAZ1 gene fusion in t(7;17). Cancer Genet Cytogenet 144: 119-124.
    
  • Müller S, Neusser M, Wienberg J (2002) Towards unlimited colors for fluorescence in-situ hybridization (FISH). Chromosome Res 10: 223-232.
    
  • Müller S, O'Brien PC, Ferguson-Smith MA, Wienberg J (1998) Cross-species colour segmenting: a novel tool in human karyotype analysis. Cytometry 33: 445-452.
    
  • Müller S, Wienberg J (2000) Advances in the development of chromosome bar codes: Integration of M-FISH and Rx-FISH technology. medgen 12: 474-477 (German).
    
  • Müller S, Wienberg J (2001) "Bar-coding" primate chromosomes: molecular cytogenetic screening for the ancestral hominoid karyotype. Hum Genet 109: 85-94.
    
  • Neusser M, Munch M, Anzenberger G, Muller S (2005) Investigation of marmoset hybrids (Cebuella pygmaea x Callithrix jacchus) and related Callitrichinae (Platyrrhini) by cross-species chromosome painting and comparative genomic hybridization. Cytogenet Genome Res 108: 191-196.
    
  • Park S-Y, Choi H-C, Chun Y-H, Kim H, Park S-H (2001) Characterization of chromosomal aberrations in lung cancer cell lines by cross-species color banding. Cancer Genet Cytogenet 124: 62-70.
    
  • Pedrazzini E, Mamaev N, Yakovleva T, Sukhikh T, Salido M, Solé F, Prat E, Camps J, Miró R, Slavutsky I (2003) Genomic rearrangements involving rDNA and centromeric heterochromatin in vulvar epidermoid carcinoma cell line A-431. Cancer Genet Cytogenet 143:50-58
    
  • Petek E, Wagner K, Steiner H, Schaffer H, Kroisel PM (2000) Prenatal diagnosis of partial trisomy 4q26-qter and monosomy for the Wolf-Hirschhorn critical region in a fetus with split hand malformation. Prenat Diagn 20: 349-352.
    
  • Petek E, Windpassinger C, Vincent JB, Cheung J, Boright AP, Scherer SW, Kroisel PM, Wagner K (2001) Disruption of a novel gene (IMMP2L) by a breakpoint in 7q31 associated with Tourette syndrome. Am J Hum Genet 68: 848-858.
    
  • Salido M, Solé F, Espinet B, Zamora L, Woessner S, Florensa L (2001) New t(11;12)(q12;q11) characetrized by RxFISH in a patient with T-cell large granular lymphocyte leukemia. Cancer Genet Cytogenet 125: 70-73.
    
  • Sanchez-Izquierdo D, Siebert R, Harder L, Marugan I, Gozzetti A, Price HP, Gesk S, Hernandez-Rivas JM, Benet I, Sole F, Sonoki T, LeBeau MM, Schlegelberger B, Dyer MJ, Garcia-Conde J, Martinez-Climent JA (2001) Detection of translocations affecting the BCL6 locus in B cell non-Hodgkin's lymphoma by interphase fluorescence in situ hybridization. Leukemia. 15: 1475-1484.
    
  • Stanyon R, Bruening R, Stone G, Shearin A, Bigoni F (2005) Reciprocal painting between humans, De Brazza's and patas monkeys reveals a major bifurcation in the Cercopithecini phylogenetic tree. Cytogenet Genome Res 108: 175-182.
    
  • Teixeira MR, Micci F, Dietrich CU, Heim S (1999) Cross-species color banding characterization of chromosomal rearrangements in leukemias with incomplete G-band karyotypes. Genes Chromosomes Cancer 26: 13-19.
    
  • Teixeira MR, Micci F, Dietrich CU, Heim S (2000) Detailed genome-wide screening for inter- and intrachromosomal abnormalities by sequential G-banding and RxFISH color banding of the same metaphase cells. Cancer Genet Cytogenet 119: 94-101.
    
  • Teixeira MR (2002) Combined classical and molecular cytogenetic analysis of cancer. Eur J Cancer 38: 1580-1584.
    
  • Wienberg J (2005) Fluorescence in situ hybridization to chromosomes as a tool to understand human and primate genome evolution. Cytogenet Genome Res 108:139-160.
    
  • Xue YB, Song X (2008) [Progresses on the methods of tumor chromosome aberration analysis.] Yi Chuan 30:1529-1535. Chinese.
    
  • Zhao L, Hayes K, Glassman A (2000) Enhanced detection of chromosomal abnormalities with the use of RxFISH multicolor banding technique. Cancer Genet Cytogenet 118: 108-111.
    
  • Zitzelsberger H, O'Brien B, Weier H-U (2002) Multicolor FISH techniques for the detection of inter- and intrachromosomal rearrangements. In: FISH-Technology, Springer-labmanual, Springer, Berlin, pp 408-424, ISBN: 3-540-67276-1.